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Some Colours
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THE GENETICS OF RAT COAT COLOUR AND PATTERN 

PART 2 – SOME COLOURS 

by Sheila Sowter

What the rat looks like (its phenotype) will depend on what instructions its genes give (its genotype).  Rats with different genotypes may have the same phenotype (remember that a rat that is cc will be albino, no matter what colour instructions are being given by other genes) and rats with the same genotype for the genes at the major loci (the only ones I shall deal with) may look slightly different due to genes at other loci, which have only a slight effect (making the coat a little paler or darker for instance).  It may help to know that there are two colour pigments in the rat’s fur, one is black or brown (eumelanin) the other is yellow or red (phaeomelanin).  [This is true of most mammals, which is why furry animals are not green or purple].  The genes act on one or both pigments to give the range of coat colours we see.  Let’s look at the loci to see the possibilities.

A locus, the agouti locus.  An agouti rat has hairs with two bands of colour, black with orange outer tips.  The agouti allele A, which is dominant will ensure the rat has two colour hairs, the other allele, a non-agouti, is recessive and aa rats have hairs that are the same colour all the way along; these rats are the self coloured rats.

B locus, the brown locus.  The dominant allele B is a ‘do nothing’ gene. There’s nothing to notice, but the recessive turns black pigments brown, an aabb rat will be chocolate and an A*bb rat chocolate agouti.

C locus, the albino locus.  Here we meet the problem of more than two alleles needing more symbols.  The most recessive is c, the albino gene and a cc rat is albino.  A bit more dominant is the ch the Himalayan gene, chc rats are Himalayan, chch rats are Siamese, completely dominant is C full colour, so CC, Cch, and Cc rats are all full colour.  There may be other alleles on this locus [In other species chinchilla is due to a gene on this locus, but not chinchilla in the rat, which is due to the interaction of several different genes].

D locus, a blue locus.  It is probably the Russian blue that is on this locus.  The recessive allele fades the black pigment to a bluish colour and the yellow to something very pale.

G locus, a blue locus.  Here the recessive allele produces the ordinary blue, also called English blue or American blue.  It seems fairly certain that the blues we have had for some while are gg blues, and dd blues are Russian blues.

M locus, the mink locus.  Like B, the recessive allele turns the black pigment to a brown colour (not the same one) so aamm rats can be mink, A*mm can give cinnamon.

Pe locus, the pearl locus.  The allele Pe that produces a noticeable effect is dominant but only shows itself in an mm rat (mink or cinnamon) where its effect is to bleach the base of the hair leaving the mink colour only at the tip.  A ‘mink’ rat with a pearl allele, is a pearl, a ‘cinnamon’ rat with a pearl allele is a cinnamon pearl.  This allele Pe is ‘homozygous lethal’, that is, rats that get Pe from both parents and so would be PePe are not born.

P locus, the pink eyed locus.  The recessive gene p turns eyes pink, black pigment to pale brown and may make the yellow pigment slightly paler, so a black rat becomes champagne and an agouti becomes silver fawn.  Pink eyed minks are also champagne, pink eyed cinnamons are silver fawns.

R locus, the red eyed locus.  The recessive gene r turns eyes ruby (though they may look black), and has an effect similar to p, giving topaz from agouti and buff from black.  It is said that r is not completely recessive so an Rr rat may be slightly different from an RR rat, but I have no first hand experience of this.

These are the genes known to affect coat colour in the rat.  There may be others we haven’t identified yet.  Since they all affect coat colour, there are combinations which give slightly different colours.  A rat that is blue but also mink mm (a mink-blue or blue-mink) is a paler blue than the one that is not mink, MM or Mm, and as mentioned earlier there are many genes that have a very slight effect.

So much for the colours, next time we can tackle the patterns.

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Last modified: March 15, 2008